writeTargetingDistance - Write targeting model distances to a file
Description¶
writeTargetingDistance
writes a 5-mer targeting distance matrix
to a tab-delimited file.
Usage¶
writeTargetingDistance(model, file)
Arguments¶
- model
- TargetingModel object with mutation likelihood information.
- file
- name of file to write.
Details¶
The targeting distance write as a tab-delimited 5x3125 matrix. Rows define the mutated
nucleotide at the center of each 5-mer, one of c("A", "C", "G", "T", "N")
,
and columns define the complete 5-mer of the unmutated nucleotide sequence.
NA
values in the distance matrix are replaced with distance 0.
Examples¶
### Not run:
# Write HS5F targeting model to working directory as hs5f.tab
# writeTargetingDistance(HH_S5F, "hh_s5f.tsv")
See also¶
Takes as input a TargetingModel object and calculates
distances using calcTargetingDistance.