RegionDefinition class

RegionDefinition-class - S4 class defining a region definition

Description¶

RegionDefinition defines a common data structure for defining the region boundaries of an Ig sequence.

name: name of the RegionDefinition.
description: description of the model and its source.
boundaries: factor defining the region boundaries of the sequence. The levels and values of boundaries determine the number of regions.
seqLength: length of the sequence.
regions: levels of the boundaries; e.g, c("cdr", "fwr").
labels: labels for the boundary and mutations combinations; e.g., c("cdr_r", "cdr_s", "fwr_r", "fwr_s").
citation: publication source.