convertNumbering - convertNumbering: IMGT-Kabat number conversion
Description¶
Converts numbering systems like Kabat or IMGT using these conventions: http://www.imgt.org/IMGTScientificChart/Numbering/IMGT-Kabat_part1.html with Gaps (unoccupied positions) shown by “G” and Asterisks (*) shown by “S”: arbitrary mappings (multiple possible “to” values) represented with “NA”
Usage¶
convertNumbering(locus, from, to, calls)
Arguments¶
- locus
- string indicating heavy (“IGH”) or light chains (“IGK” or “IGL)
- from
- string indicating numbering system to convert to (“IMGT” or “KABAT”)
- to
- string indicating original numbering system (“IMGT” or “KABAT”)
- calls
- vector of strings representing original numbering
Value¶
A vector of string indicating the corresponding numbering
Examples¶
convertNumbering("IGH", "IMGT", "KABAT", c("51", "23", "110"))
[1] "46" "22" "G"
convertNumbering("IGH", "KABAT", "IMGT", c("51", "23", "G"))
[1] "56" "24" "NA"